SegTraQ documentation

SegTraQ is a tool for the assessment of segmentation quality in spatial transcriptomics data.

Contents:

• The baseline (bl) accessor
• The clustering stability (cs) accessor
• The region correlation (rc) accessor
• The supervised (sp) accessor
• The point statistics (ps) accessor
• The volume (vl) accessor
• The SegTraQ (SegTraQ) class
• Utility functions

Tutorials:

• Technology Focus - 10x Genomics Xenium
• Technology Focus - Vizgen MERSCOPE
• Technology Focus - NanoString CosMx
• Getting data into the right format
• Baseline metrics
• Clustering stability
• Correlation between subcellular regions
• 3D Metrics
• Supervised metrics
• Point statistics