SegTraQ documentation

SegTraQ is a tool for the assessment of segmentation quality in spatial transcriptomics data.

Contents:

• The baseline (bl) accessor
• The clustering stability (cs) accessor
• The nuclear correlation (nc) accessor
• The spillover metrics (sp) accessor

Tutorials:

• Baseline metrics
• Clustering Stability
• Correlation to nuclear segmentation
• Label transfer from scRNA-seq dataset via Pearson correlation
• Load spatialData object
• Correlations between the top and bottom of the slice