Index A | B | C | D | F | G | M | N | P | R | S | T | U | V A add_nuc_shapes_via_cellpose() (in module segtraq) adjusted_rand_index() (in module segtraq.cs.clustering_stability) B boxplot() (in module segtraq.pl.plotting) boxplot_combined() (in module segtraq.pl.plotting) C celltype_proportions() (in module segtraq.pl.plotting) cluster_connectedness() (in module segtraq.cs.clustering_stability) D distance_to_centroid() (in module segtraq.ps.point_statistics) distance_to_membrane() (in module segtraq.ps.point_statistics) F filter_cells() (segtraq.SegTraQ method) filter_control_and_low_quality_transcripts() (segtraq.SegTraQ method) fraction_heterotypic_overlap() (in module segtraq.vl.volume) G genes_per_cell() (in module segtraq.bl.baseline) M marker_purity() (in module segtraq.sp.supervised) markers_from_reference() (in module segtraq) match_nuclei_to_cells() (in module segtraq.rs.region_similarity) mean_transcripts_per_gene_per_cell() (in module segtraq.bl.baseline) membrane_distance_skewness() (in module segtraq.ps.point_statistics) module segtraq.bl.baseline segtraq.cs.clustering_stability segtraq.pl.plotting segtraq.ps.point_statistics segtraq.rs.region_similarity segtraq.sp.supervised segtraq.vl.volume morphological_features() (in module segtraq.bl.baseline) mutually_exclusive_coexpression_rate() (in module segtraq.sp.supervised) N neighbor_contamination() (in module segtraq.sp.supervised) num_cells() (in module segtraq.bl.baseline) num_genes() (in module segtraq.bl.baseline) num_transcripts() (in module segtraq.bl.baseline) P perc_unassigned_transcripts() (in module segtraq.bl.baseline) perc_unassigned_transcripts_per_gene() (in module segtraq.bl.baseline) percentage_transcripts_in_compartments() (in module segtraq.ps.point_statistics) purity() (in module segtraq.cs.clustering_stability) R run_baseline() (segtraq.SegTraQ method) run_clustering_stability() (segtraq.SegTraQ method) run_label_transfer() (in module segtraq) (segtraq.SegTraQ method) run_point_statistics() (segtraq.SegTraQ method) run_region_similarity() (segtraq.SegTraQ method) run_supervised() (segtraq.SegTraQ method) run_volume_metrics() (segtraq.SegTraQ method) S sdata (segtraq.SegTraQ property) SegTraQ (class in segtraq) segtraq.bl.baseline module segtraq.cs.clustering_stability module segtraq.pl.plotting module segtraq.ps.point_statistics module segtraq.rs.region_similarity module segtraq.sp.supervised module segtraq.vl.volume module silhouette_score() (in module segtraq.cs.clustering_stability) similarity_border_neighborhood() (in module segtraq.rs.region_similarity) similarity_nucleus_cell() (in module segtraq.rs.region_similarity) similarity_nucleus_cytoplasm() (in module segtraq.rs.region_similarity) similarity_top_bottom() (in module segtraq.vl.volume) T transcript_density() (in module segtraq.bl.baseline) transcripts_per_cell() (in module segtraq.bl.baseline) U umap() (in module segtraq.pl.plotting) V validate_spatialdata() (in module segtraq) vertical_signal_integrity_per_cell() (in module segtraq.vl.volume)
